STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yqeYYqeY-like protein; KEGG: efc:EFAU004_01997 1.2e-29 Glutamyl-tRNA(Gln) amidotransferase subunit E K09117; Psort location: Cytoplasmic, score: 7.50. (170 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; KEGG: sew:SeSA_A3399 2.7e-09 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.97; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.961
rpsO
Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.
  
    0.588
KXA29628.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.516
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
  
    0.495
KXA29631.1
SNARE-like domain protein; KEGG: hse:Hsero_2476 4.4e-07 cls; phosphatidylserine/phosphatidylglycerophosphate/cardiolipi n synthase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.467
KXA29626.1
Hypothetical protein; KEGG: mir:OCQ_01980 0.0074 seryl-tRNA synthetase K01875; Psort location: Cytoplasmic, score: 7.50.
       0.457
KXA29627.1
Nodulation efficiency protein D; KEGG: bpu:BPUM_2272 6.6e-29 yqeZ; serine peptidase K07403; Psort location: CytoplasmicMembrane, score: 10.00.
       0.457
rssA_1
Phospholipase, patatin family; KEGG: bnm:BALAC2494_01451 5.4e-66 Serine endopeptidase; Psort location: Cytoplasmic, score: 7.50.
       0.454
ccpN
Putative transcriptional repressor CcpN; KEGG: ppo:PPM_2177 1.9e-38 yqzB; inosine-5'-monophosphate dehydrogenase IMP dehydrogenase; IMPDH; IMPD; Psort location: Cytoplasmic, score: 7.50.
       0.413
rsmE
RNA methyltransferase, RsmE family; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
     
 0.401
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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