STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA29648.1KEGG: apb:SAR116_0501 2.8e-09 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00. (757 aa)    
Predicted Functional Partners:
KXA29647.1
KEGG: amt:Amet_3057 1.3e-41 DNA polymerase III subunit delta; K02340 DNA polymerase III subunit delta.
 
   
 0.889
smf
DNA protecting protein DprA; KEGG: ccm:Ccan_01460 1.2e-43 protein smf K04096; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.807
KXA31363.1
comF family protein; KEGG: ccm:Ccan_18380 1.7e-14 protein COM101A; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.789
outO
Bacterial peptidase A24 protein; KEGG: clj:CLJU_c05610 7.7e-35 bifunctional type IV leader peptidase/N-methyltransferase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.623
comM
Mg chelatase-like protein; KEGG: ccm:Ccan_16640 6.3e-127 competence protein comM K07391; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.614
comEA
comEA protein; KEGG: has:Halsa_0780 1.8e-06 glycogen/starch synthase K00703; Psort location: CytoplasmicMembrane, score: 9.51.
 
  
 0.602
KXA29649.1
Hypothetical protein; KEGG: ddi:DDB_G0274493 8.1e-14 lig1; DNA ligase I; K10747 DNA ligase 1; Psort location: Cytoplasmic, score: 7.50.
       0.599
rpsT
Ribosomal protein S20; Binds directly to 16S ribosomal RNA.
       0.591
KXA30368.1
Prepilin-type cleavage/methylation protein.
  
  
 0.511
yfaY
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 5.6e-13 fadD; long-chain-fatty-acid--CoA ligase K03743; Psort location: Cytoplasmic, score: 7.50; Belongs to the CinA family.
     
 0.511
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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