Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rbsAPutative sugar ABC transporter, ATP binding protein; KEGG: amo:Anamo_0156 4.3e-160 ABC-type sugar transport system, ATPase component; K10441 ribose transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78. (530 aa)    
Predicted Functional Partners:
KXA29699.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: plm:Plim_0780 1.8e-12 inner-membrane translocator K10440; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.986
KXA29700.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: dtu:Dtur_1666 5.8e-12 sugar ABC transporter ATPase K10440; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.986
KXA29702.1
Hypothetical protein.
 
  
 0.935
metG_1
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
  
   0.826
alsC
Hypothetical protein; KEGG: apb:SAR116_1608 4.2e-43 inner-membrane translocator K02057; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
     0.782
KXA29373.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: pfe:PSF113_0698 3.8e-42 ABC transporter permease K02057; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
   
 0.759
tmpC
Basic membrane protein; KEGG: apb:SAR116_1606 6.6e-45 membrane lipoprotein K07335.
   
 0.705
psuK
HTH domain protein; KEGG: cbj:H04402_01237 3.1e-70 pseudouridine kinase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.642
ccpA
Putative glucose-resistance amylase regulator; KEGG: apr:Apre_0881 1.3e-80 LacI family transcriptional regulator K02529; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.473
cstA
Carbon starvation protein CstA; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.470
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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