STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydcVPutative spermidine/putrescine ABC transporter, permease protein PotC; KEGG: aoe:Clos_2538 1.1e-81 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00. (260 aa)    
Predicted Functional Partners:
potD
KEGG: ebe:B21_01129 2.7e-64 potD; potD, subunit of putrescine/spermidine ABC transporter K11069; Psort location: CytoplasmicMembrane, score: 9.93.
 
 0.999
potB
Putative spermidine/putrescine ABC transporter, permease protein PotB; KEGG: ebe:B21_01131 1.6e-52 potB; potB, subunit of putrescine/spermidine ABC transporter K11071; Psort location: CytoplasmicMembrane, score: 10.00.
  
0.997
potA_3
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 0.997
puuR
DNA-binding helix-turn-helix protein; KEGG: cnc:CNE_2c19670 4.0e-15 amaB1; N-carbamoyl-L-amino acid hydrolase AmaB; Psort location: Cytoplasmic, score: 7.50.
   
 
 0.826
KXA29377.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.558
ecfA1_4
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
   
    0.459
ecfA2_1
Cobalt ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
 
    0.459
KXA31189.1
S4 domain protein; KEGG: hiq:CGSHiGG_06085 6.6e-06 glucose-6-phosphate 1-dehydrogenase K04762; Psort location: Cytoplasmic, score: 7.50.
   
    0.433
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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