Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
potBPutative spermidine/putrescine ABC transporter, permease protein PotB; KEGG: ebe:B21_01131 1.6e-52 potB; potB, subunit of putrescine/spermidine ABC transporter K11071; Psort location: CytoplasmicMembrane, score: 10.00. (276 aa)    
Predicted Functional Partners:
potD
KEGG: ebe:B21_01129 2.7e-64 potD; potD, subunit of putrescine/spermidine ABC transporter K11069; Psort location: CytoplasmicMembrane, score: 9.93.
 
 0.999
ydcV
Putative spermidine/putrescine ABC transporter, permease protein PotC; KEGG: aoe:Clos_2538 1.1e-81 ornithine carbamoyltransferase K11070; Psort location: CytoplasmicMembrane, score: 10.00.
0.999
potA_3
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 0.999
puuR
DNA-binding helix-turn-helix protein; KEGG: cnc:CNE_2c19670 4.0e-15 amaB1; N-carbamoyl-L-amino acid hydrolase AmaB; Psort location: Cytoplasmic, score: 7.50.
     
 0.812
KXA29377.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.556
murB_3
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
  
  
 0.432
sulD
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.404
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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