Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
yccM4Fe-4S binding domain protein; KEGG: cco:CCC13826_1973 4.4e-16 riboflavin biosynthesis protein ribAB; Psort location: CytoplasmicMembrane, score: 9.99. (294 aa)    
Predicted Functional Partners:
resA_1
Redoxin family protein; KEGG: pfl:PFL_4455 5.4e-11 AhpC/TSA family antioxidant.
 
   
 0.954
KXA29152.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.809
resA_2
Redoxin family protein; KEGG: aca:ACP_1678 1.6e-11 thiol-disulfide oxidoreductase.
 
    0.703
rnfB_2
Ferredoxin; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily.
  
 
 0.687
hcp
Hydroxylamine reductase; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.658
KXA29194.1
Hypothetical protein; KEGG: wbr:WGLp152 0.00021 ppiD; hypothetical protein; K03770 peptidyl-prolyl cis-trans isomerase D.
 
  
 0.472
arlR_2
Putative transcriptional activator protein IrlR; KEGG: cnc:CNE_2c16400 2.0e-36 czcS; sensor protein CzcS K07665; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.446
copA
Copper-exporting ATPase; KEGG: apr:Apre_0987 8.9e-264 heavy metal translocating P-type ATPase; K01533 Cu2+-exporting ATPase; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.421
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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