STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimNSua5/YciO/YrdC/YwlC family protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. (351 aa)    
Predicted Functional Partners:
prmC
protein-(glutamine-N5) methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif; Belongs to the protein N5-glutamine methyltransferase family. PrmC subfamily.
 
  
 0.866
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
     
 0.815
rpiB
Ribose-5-phosphate isomerase B; KEGG: cbn:CbC4_2276 1.8e-42 rpiB; ribose 5-phosphate isomerase B; K01808 ribose 5-phosphate isomerase B; Psort location: Cytoplasmic, score: 7.50.
       0.800
mnaA
UDP-N-acetylglucosamine 2-epimerase; KEGG: cst:CLOST_2125 6.7e-116 rffE; UDP-N-acetyl glucosamine-2-epimerase K01791; Psort location: Cytoplasmic, score: 9.97; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
    0.790
mraY_1
Glycosyltransferase, group 4 family; KEGG: cst:CLOST_2126 2.2e-85 tagO; tago K13685; Psort location: CytoplasmicMembrane, score: 10.00.
       0.780
coaE
dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
 
    0.728
abgB_1
Amidohydrolase; KEGG: bcl:ABC1615 6.6e-77 N-acyl-L-amino acid amidohydrolase K01436; Psort location: Cytoplasmic, score: 7.50; Belongs to the peptidase M20A family.
  
    0.603
ltaS1
Arylsulfatase; KEGG: bmd:BMD_0202 3.1e-47 sulfatase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.601
thlA
KEGG: apr:Apre_1351 5.6e-151 acetyl-CoA acetyltransferase; K00626 acetyl-CoA C-acetyltransferase; Psort location: Cytoplasmic, score: 9.97; Belongs to the thiolase-like superfamily. Thiolase family.
       0.499
rsmB
Ribosomal RNA small subunit methyltransferase B; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
  
 0.485
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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