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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctc_5Hypothetical protein; KEGG: ccl:Clocl_0282 2.7e-17 beta-1,4-xylanase; K01181 endo-1,4-beta-xylanase; Psort location: Cellwall, score: 10.00. (520 aa)    
Predicted Functional Partners:
gltX
glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
 
     0.800
ebh_2
Copper amine oxidase domain protein; KEGG: bbe:BBR47_04720 3.8e-10 cwlU; hypothetical protein; K01448 N-acetylmuramoyl-L-alanine amidase.
 
   0.785
KXA29571.1
KEGG: bce:BC0902 7.1e-07 S-layer protein / N-acetylmuramoyl-L-alanine amidase K01448.
 
  
 0.783
KXA29572.1
Hypothetical protein; KEGG: cle:Clole_3979 2.9e-08 glucan endo-1,3-beta-D-glucosidase; Psort location: Cellwall, score: 9.21.
 
  
 0.778
KXA27842.1
Hypothetical protein; KEGG: cex:CSE_02000 5.5e-09 putative nucleotidase; Psort location: Cellwall, score: 9.20.
     0.776
KXA29704.1
Polysaccharide pyruvyl transferase CsaB; KEGG: csc:Csac_1349 1.5e-61 glycosyl transferase family protein K05946.
 
     0.771
KXA28198.1
Hypothetical protein; KEGG: hhd:HBHAL_4207 0.00016 pgdS; gamma-DL-glutamyl hydrolase; Psort location: Cellwall, score: 9.21.
  
   
 0.770
KXA30880.1
Copper amine oxidase domain protein; KEGG: tep:TepRe1_0598 4.5e-16 cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase.
 
     0.766
KXA30814.1
Copper amine oxidase domain protein; KEGG: dku:Desku_0366 3.9e-12 N-acetylmuramoyl-L-alanine amidase K01448; Psort location: CytoplasmicMembrane, score: 9.55.
 
     0.762
KXA31426.1
Copper amine oxidase domain protein; KEGG: tep:TepRe1_0598 1.7e-26 cell wall hydrolase/autolysin; K01448 N-acetylmuramoyl-L-alanine amidase.
 
     0.760
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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