STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrpCPutative HTH-type transcriptional regulator Ptr2; KEGG: pfe:PSF113_5648 2.0e-11 asnC family transcriptional regulator K05800; Psort location: Cytoplasmic, score: 7.50. (161 aa)    
Predicted Functional Partners:
yycF
Transcriptional regulatory protein WalR; KEGG: ava:Ava_1878 8.6e-52 two component transcriptional regulator K11329; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.743
yycG_1
Alkaline phosphatase synthesis sensor protein PhoR family protein; KEGG: aoe:Clos_2783 7.2e-103 multi-sensor signal transduction histidine kinase K07652; Psort location: CytoplasmicMembrane, score: 8.78.
     
 0.575
KXA28989.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.
       0.563
speG
KEGG: bcr:BCAH187_A1733 8.5e-13 GNAT family acetyltransferase; K00676 ribosomal-protein-alanine N-acetyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.519
KXA28994.1
DnaD domain protein; Psort location: Cytoplasmic, score: 7.50.
       0.483
dnaI_1
Putative DNA replication protein DnaC; KEGG: aae:aq_2053 0.00047 recG; ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG; Psort location: Cytoplasmic, score: 7.50.
       0.483
aspC
Aminotransferase, class I/II; KEGG: amt:Amet_2618 4.2e-107 aspartate aminotransferase K00812; Psort location: Cytoplasmic, score: 7.50.
     
 0.474
KXA28997.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.437
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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