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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ycaMAmino acid permease; Psort location: CytoplasmicMembrane, score: 10.00. (478 aa)    
Predicted Functional Partners:
apeB
Aspartyl aminopeptidase domain protein; KEGG: apv:Apar_0506 5.9e-124 putative aminopeptidase 2; Psort location: Cytoplasmic, score: 7.50.
 
     0.778
MhpC
Hydrolase, alpha/beta domain protein; KEGG: efc:EFAU004_01231 1.1e-40 alpha/beta hydrolase; Psort location: Cytoplasmic, score: 9.97.
 
 
 0.649
clcA
Putative ATP synthase F0, A subunit; KEGG: cpr:CPR_1400 8.3e-86 chloride channel protein K01529; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
 
 0.572
KXA29005.1
Hypothetical protein; KEGG: mpx:MPD5_0800 2.3e-161 hypothetical protein; K14205 phosphatidylglycerol lysyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
 
    0.548
KXA29001.1
Hypothetical protein; Psort location: Extracellular, score: 8.91.
       0.414
psuK
HTH domain protein; KEGG: cbj:H04402_01237 3.1e-70 pseudouridine kinase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.408
purL
KEGG: apr:Apre_1107 0. phosphoribosylformylglycinamidine synthase K01952; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.406
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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