Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KXA28858.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (54 aa)    
Predicted Functional Partners:
KXA28857.1
Aminotransferase, class V; KEGG: apr:Apre_0365 6.5e-70 cysteine desulfurase; Psort location: Cytoplasmic, score: 9.97.
       0.777
KXA28860.1
KEGG: cpy:Cphy_1486 6.3e-88 selenide, water dikinase K01008; Psort location: Cytoplasmic, score: 7.50.
       0.674
KXA28859.1
Selenium metabolism protein YedF; KEGG: drm:Dred_1242 1.5e-24 SirA family protein; K04085 tRNA 2-thiouridine synthesizing protein A; Psort location: Cytoplasmic, score: 7.50.
       0.665
KXA28861.1
tRNA 2-selenouridine synthase; KEGG: fma:FMG_1611 4.0e-70 putative ATP/GTP binding protein; K06917 tRNA 2-selenouridine synthase; Psort location: Cytoplasmic, score: 7.50.
       0.481
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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