Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KXA28886.1Transcriptional regulator, MarR family; KEGG: bsr:I33_0254 0.00017 YbfA. (147 aa)    
Predicted Functional Partners:
KXA28885.1
EDD domain protein, DegV family; KEGG: mgf:MGF_3873 2.7e-25 DegV-like protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.673
ramA
Hydrolase, carbon-nitrogen family; KEGG: rno:288174 1.9e-47 Nit2, MGC124762, RGD1310494; nitrilase family, member 2 K13566; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.406
uppP
Undecaprenyl-diphosphatase UppP; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
     
 0.403
KXA30966.1
Hypothetical protein; KEGG: cdf:CD1628 3.0e-06 vanTG; serine/alanine racemase; Psort location: CytoplasmicMembrane, score: 10.00.
  
     0.400
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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