STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abgTAbgT transporter family protein; Psort location: CytoplasmicMembrane, score: 10.00. (536 aa)    
Predicted Functional Partners:
sstT
Transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
 
     0.645
abgB_1
Amidohydrolase; KEGG: bcl:ABC1615 6.6e-77 N-acyl-L-amino acid amidohydrolase K01436; Psort location: Cytoplasmic, score: 7.50; Belongs to the peptidase M20A family.
 
  
 0.530
sdhB
KEGG: faa:HMPREF0389_01608 2.6e-73 L-serine dehydratase, iron-sulfur-dependent subunit beta; K01752 L-serine dehydratase.
       0.498
sdhA
KEGG: faa:HMPREF0389_01609 5.1e-102 L-serine dehydratase, iron-sulfur-dependent subunit alpha; K01752 L-serine dehydratase; Psort location: Cytoplasmic, score: 7.50.
       0.498
KXA28888.1
Hypothetical protein; KEGG: fsi:Flexsi_0269 0.0024 glycosyl transferase; K07264 4-amino-4-deoxy-L-arabinose transferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.494
rpmE
Ribosomal protein L31; Binds the 23S rRNA.
  
    0.402
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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