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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KXA28911.1Tetratricopeptide repeat protein; Psort location: Cytoplasmic, score: 7.50. (518 aa)    
Predicted Functional Partners:
engB
Ribosome biogenesis GTP-binding protein YsxC; Necessary for normal cell division and for the maintenance of normal septation; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.
   
    0.615
sigE
Sigma-70 region 2; KEGG: ppo:PPM_p0279 1.8e-17 sigW; ECF subfamily RNA polymerase sigma-70 factor K03088; Psort location: CytoplasmicMembrane, score: 8.78.
  
    0.551
KXA28909.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.548
ghrB
KEGG: sax:USA300HOU_1857 1.1e-40 D-3-phosphoglycerate dehydrogenase; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.536
KXA28913.1
CRISPR-associated endonuclease Cas3-HD; KEGG: rcp:RCAP_rcc01300 7.7e-42 Cas3 family CRISPR-associated helicase K07012.
       0.454
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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