Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cmpRLysR substrate binding domain protein; KEGG: mct:MCR_1819 1.5e-15 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.67; Belongs to the LysR transcriptional regulatory family. (291 aa)    
Predicted Functional Partners:
bcrC_2
PAP2 family protein; KEGG: cbj:H04402_00358 5.4e-27 phosphatidylglycerophosphatase B; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.775
KXA28874.1
LysR substrate binding domain protein; KEGG: shn:Shewana3_3435 1.3e-11 LysR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
  
     0.771
KXA30897.1
Transcriptional regulator, AraC family; KEGG: ppo:PPM_0977 3.8e-12 yesN9; chemotaxis response regulator protein-glutamate methylesterase K07720; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.528
melR_1
Transcriptional regulator, AraC family; KEGG: ppo:PPM_0977 1.6e-14 yesN9; chemotaxis response regulator protein-glutamate methylesterase K07720.
 
  
 0.520
KXA31896.1
Cyclic nucleotide-binding domain protein; KEGG: fma:FMG_1494 0.00029 pyruvate-formate-lyase-activating enzyme; K04069 pyruvate formate lyase activating enzyme; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.460
KXA28678.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.460
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.436
melR_2
Transcriptional regulator, AraC family; KEGG: btc:CT43_CH3681 9.4e-16 adaA; ADA regulatory protein; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.432
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.423
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.422
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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