Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yehW_1Choline transport system permease protein opuBB; KEGG: efi:OG1RF_10594 6.6e-61 opuCB; glycine/betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, membrane protein K05846; Psort location: CytoplasmicMembrane, score: 10.00. (213 aa)    
Predicted Functional Partners:
opuCC_2
Glycine betaine/carnitine/choline-binding protein; KEGG: efi:OG1RF_10593 3.6e-85 opuCC; glycine/betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, binding protein K05845; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
proV_2
KEGG: ser:SERP2358 1.2e-109 amino acid ABC transporter ATP-binding protein; K02000 glycine betaine/proline transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
 0.997
yehW_2
KEGG: efi:OG1RF_10592 1.7e-62 opuCD; glycine/betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, membrane protein K05846; Psort location: CytoplasmicMembrane, score: 10.00.
 
 
0.985
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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