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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
opuCC_2Glycine betaine/carnitine/choline-binding protein; KEGG: efi:OG1RF_10593 3.6e-85 opuCC; glycine/betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, binding protein K05845; Psort location: CytoplasmicMembrane, score: 10.00. (325 aa)    
Predicted Functional Partners:
yehW_1
Choline transport system permease protein opuBB; KEGG: efi:OG1RF_10594 6.6e-61 opuCB; glycine/betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, membrane protein K05846; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.998
yehW_2
KEGG: efi:OG1RF_10592 1.7e-62 opuCD; glycine/betaine/carnitine/choline ABC superfamily ATP binding cassette transporter, membrane protein K05846; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.998
proV_2
KEGG: ser:SERP2358 1.2e-109 amino acid ABC transporter ATP-binding protein; K02000 glycine betaine/proline transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
 
 0.992
porA
KEGG: fma:FMG_0385 0. pyruvate/ferredoxin oxidoreductase; K03737 putative pyruvate-flavodoxin oxidoreductase; Psort location: Cytoplasmic, score: 7.50.
     
 0.521
potA_3
Polyamine ABC transporter, ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
  0.441
appA
ABC transporter, substrate-binding protein, family 5; KEGG: gwc:GWCH70_0479 2.3e-58 4-phytase K02035; Psort location: Cellwall, score: 9.07.
    
 0.423
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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