STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywrDPutative gamma-glutamyltransferase; KEGG: clj:CLJU_c19030 7.0e-144 ggt; gamma-glutamyltranspeptidase K00681; Psort location: Extracellular, score: 9.60. (533 aa)    
Predicted Functional Partners:
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
     
 0.786
uvrB
Excinuclease ABC, B subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
     
 0.778
ynhG
ErfK/YbiS/YcfS/YnhG; KEGG: bmq:BMQ_1029 1.0e-17 putative peptidoglycan binding domain-containing protein.
 
     0.741
artP_3
ABC transporter, substrate-binding protein, family 3; KEGG: eci:UTI89_C2121 5.4e-27 fliY; cystine transporter subunit K02424.
  
  
 0.600
artM_2
Arginine ABC transporter, ATP-binding protein ArtM; KEGG: cno:NT01CX_0934 1.3e-89 ABC transporter; K02028 polar amino acid transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
  
    0.543
yecS_1
Putative arginine ABC transporter, permease protein ArtQ; KEGG: rcm:A1E_00665 9.6e-37 sdhA; succinate dehydrogenase flavoprotein subunit K02029; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.468
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
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