KXA27817.1 protein (Peptoniphilus harei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KXA27817.1

TIGR02206 family protein; Psort location: CytoplasmicMembrane, score: 10.00. (240 aa)

Predicted Functional Partners:

dinB_1

0.583

KXA27816.1

0.493

KXA27819.1

0.429

Your Current Organism:

Peptoniphilus harei

NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KXA27816.1	KXA27817.1	HMPREF3229_01887	HMPREF3229_01888	Hypothetical protein; KEGG: aga:AgaP_AGAP004992 0.0026 AGAP004992-PA; K05309 microsomal prostaglandin-E synthase 2.	TIGR02206 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.493
KXA27817.1	KXA27816.1	HMPREF3229_01888	HMPREF3229_01887	TIGR02206 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; KEGG: aga:AgaP_AGAP004992 0.0026 AGAP004992-PA; K05309 microsomal prostaglandin-E synthase 2.	0.493
KXA27817.1	KXA27819.1	HMPREF3229_01888	HMPREF3229_01890	TIGR02206 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; KEGG: ctc:CTC01739 4.4e-16 phosphoserine phosphatase.	0.429
KXA27817.1	dinB_1	HMPREF3229_01888	HMPREF3229_01889	TIGR02206 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	0.583
KXA27819.1	KXA27817.1	HMPREF3229_01890	HMPREF3229_01888	Hypothetical protein; KEGG: ctc:CTC01739 4.4e-16 phosphoserine phosphatase.	TIGR02206 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.429
KXA27819.1	dinB_1	HMPREF3229_01890	HMPREF3229_01889	Hypothetical protein; KEGG: ctc:CTC01739 4.4e-16 phosphoserine phosphatase.	ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	0.566
dinB_1	KXA27817.1	HMPREF3229_01889	HMPREF3229_01888	ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	TIGR02206 family protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.583
dinB_1	KXA27819.1	HMPREF3229_01889	HMPREF3229_01890	ImpB/MucB/SamB family protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.	Hypothetical protein; KEGG: ctc:CTC01739 4.4e-16 phosphoserine phosphatase.	0.566