STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cobCKEGG: ctc:CTC02637 6.6e-29 phosphoglycerate mutase K15634; Psort location: Cytoplasmic, score: 7.50. (205 aa)    
Predicted Functional Partners:
trxA
Thioredoxin; KEGG: sis:LS215_0050 2.5e-08 thioredoxin K03671; Psort location: Cytoplasmic, score: 7.50.
     
 0.782
trxB_2
KEGG: dai:Desaci_3389 3.6e-76 thioredoxin-disulfide reductase; K00384 thioredoxin reductase (NADPH); Psort location: Cytoplasmic, score: 9.97.
       0.778
mutS_1
MutS domain V protein; KEGG: edi:EDI_294890 4.1e-23 DNA mismatch repair protein MSH2; Psort location: Cytoplasmic, score: 7.50.
  
    0.533
pyk
Pyruvate kinase; KEGG: csc:Csac_1831 1.4e-163 pyruvate kinase; K00873 pyruvate kinase; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.491
serA
KEGG: apo:Arcpr_0691 1.5e-54 D-3-phosphoglycerate dehydrogenase K00058; Psort location: Cytoplasmic, score: 9.97; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
  
 0.472
dagK
Lipid kinase, YegS/Rv2252/BmrU family; KEGG: ppo:PPM_0837 2.2e-46 yerQ; lipid kinase yegS K07029; Psort location: Cytoplasmic, score: 7.50.
    
 0.467
Your Current Organism:
Peptoniphilus harei
NCBI taxonomy Id: 54005
Other names: ATCC BAA-601, CCUG 38491, CIP 105323, DSM 10020, NCTC 13076, P. harei, Peptostreptococcus harei, Schleiferella harei
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.