STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD54924.1Hypothetical protein. (301 aa)    
Predicted Functional Partners:
SFD54948.1
TRAP-type mannitol/chloroaromatic compound transport system, substrate-binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
       0.615
SiaT_35
TRAP transporter, DctM subunit.
       0.596
SFD54986.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
       0.596
SFD54910.1
Uncharacterized domain 1-containing protein.
     
 0.579
SFE03945.1
Hypothetical protein.
  
     0.548
SFE04137.1
Glyoxylase, beta-lactamase superfamily II.
 
 
 0.503
AiiA
Glyoxylase, beta-lactamase superfamily II.
 
 
 0.485
AiiB
Glyoxylase, beta-lactamase superfamily II.
 
 
 0.475
SFD55005.1
Transcriptional regulator, MarR family.
     
 0.466
YvaM
Pimeloyl-ACP methyl ester carboxylesterase.
  
     0.462
Your Current Organism:
Roseovarius indicus
NCBI taxonomy Id: 540747
Other names: CCTCC AB 208233, DSM 26383, LMG 24622, LMG:24622, MCCC 1A01227, R. indicus, Roseovarius indicus Lai et al. 2011, Roseovarius sp. B108, strain 2PR52-14, strain B108
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