STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD60955.1Phage portal protein, HK97 family. (445 aa)    
Predicted Functional Partners:
SFD82717.1
Phage major capsid protein, HK97 family.
 
 
 0.928
SFD57538.1
Phage major capsid protein, HK97 family.
 
 
 0.921
SFD60988.1
Phage prohead protease, HK97 family/phage major capsid protein, HK97 family,TIGR01554.
 
   
 0.915
SFD61004.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
   
 0.902
SFD60941.1
Hypothetical protein.
     
 0.793
SFD60972.1
Hypothetical protein.
       0.782
SFD60927.1
Phage gp6-like head-tail connector protein.
       0.775
SFD82812.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
 
   
 0.733
SFD82702.1
Phage prohead protease, HK97 family.
 
   
 0.702
SFD82798.1
Phage terminase, small subunit, putative, P27 family.
 
  
 0.675
Your Current Organism:
Roseovarius indicus
NCBI taxonomy Id: 540747
Other names: CCTCC AB 208233, DSM 26383, LMG 24622, LMG:24622, MCCC 1A01227, R. indicus, Roseovarius indicus Lai et al. 2011, Roseovarius sp. B108, strain 2PR52-14, strain B108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.