STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD79616.1Uncharacterized conserved protein. (128 aa)    
Predicted Functional Partners:
SFD79588.1
Uncharacterized conserved protein.
 
    
0.810
PuuR_4
Transcriptional regulator, XRE family with cupin sensor.
 
     0.804
SFD79602.1
Uncharacterized conserved protein.
 
    
0.799
MmuM
Homocysteine S-methyltransferase.
       0.789
RhtB_6
Threonine/homoserine/homoserine lactone efflux protein.
  
    0.786
GcvT_17
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
       0.784
CcrA2_3
Alcohol dehydrogenase.
       0.784
SFE27850.1
Uncharacterized conserved protein.
 
     0.782
SFE58860.1
Uncharacterized conserved protein.
  
     0.747
SFE26155.1
Uncharacterized conserved protein.
  
     0.730
Your Current Organism:
Roseovarius indicus
NCBI taxonomy Id: 540747
Other names: CCTCC AB 208233, DSM 26383, LMG 24622, LMG:24622, MCCC 1A01227, R. indicus, Roseovarius indicus Lai et al. 2011, Roseovarius sp. B108, strain 2PR52-14, strain B108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.