STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFD81015.1Putative signal transducing protein. (73 aa)    
Predicted Functional Partners:
YfiC
tRNA1(Val) A37 N6-methylase TrmN6; Belongs to the methyltransferase superfamily.
       0.865
SFD81049.1
Hypothetical protein.
 
     0.746
IspB
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.737
SFE68193.1
TIGR02302 family protein.
 
     0.529
SFD77227.1
N-terminal double-transmembrane domain-containing protein.
  
     0.516
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.514
SFE36222.1
Transcriptional regulator, MarR family.
 
     0.478
SFD94046.1
TPR repeat-containing protein.
 
     0.456
DnaX_2
DNA polymerase III, delta prime subunit.
 
    0.454
SFD47459.1
Uncharacterized conserved protein, tellurite resistance protein B (TerB) family.
 
     0.438
Your Current Organism:
Roseovarius indicus
NCBI taxonomy Id: 540747
Other names: CCTCC AB 208233, DSM 26383, LMG 24622, LMG:24622, MCCC 1A01227, R. indicus, Roseovarius indicus Lai et al. 2011, Roseovarius sp. B108, strain 2PR52-14, strain B108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.