STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GsiA_10Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (697 aa)    
Predicted Functional Partners:
GsiD_9
Peptide/nickel transport system permease protein.
 
  
 0.952
GsiC_12
Peptide/nickel transport system permease protein.
 
  
 0.948
HbpA_4
Peptide/nickel transport system substrate-binding protein.
 
  
 0.773
DppE_3
Peptide/nickel transport system substrate-binding protein.
 
  
 0.766
DppE_1
Peptide/nickel transport system substrate-binding protein.
 
  
 0.757
SFD95464.1
Sarcosine oxidase subunit gamma.
  
     0.715
SFE32462.1
Fatty acid desaturase.
  
     0.713
OppD_1
Peptide/nickel transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
  
0.696
SFE32691.1
Trimethylamine---corrinoid protein Co-methyltransferase; Belongs to the trimethylamine methyltransferase family.
  
     0.680
GcvT_9
Dimethylglycine dehydrogenase; Belongs to the GcvT family.
 
    0.604
Your Current Organism:
Roseovarius indicus
NCBI taxonomy Id: 540747
Other names: CCTCC AB 208233, DSM 26383, LMG 24622, LMG:24622, MCCC 1A01227, R. indicus, Roseovarius indicus Lai et al. 2011, Roseovarius sp. B108, strain 2PR52-14, strain B108
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.