STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFE49512.1PRC-barrel domain-containing protein. (383 aa)    
Predicted Functional Partners:
PdtaS_2
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
 
     0.691
PdtaR
Response regulator receiver protein.
 
    0.661
SFE49473.1
Phospholipase D1/2.
 
    0.636
SFE49494.1
Phospholipase_D-nuclease N-terminal.
 
     0.588
FixK_3
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.555
YlaC
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.517
TqsA_1
Predicted PurR-regulated permease PerM.
 
     0.475
SFE33665.1
Putative Mg2+ transporter-C (MgtC) family protein.
  
     0.425
FixK_4
cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases.
  
     0.406
SFE49228.1
Hypothetical protein.
  
     0.401
Your Current Organism:
Roseovarius indicus
NCBI taxonomy Id: 540747
Other names: CCTCC AB 208233, DSM 26383, LMG 24622, LMG:24622, MCCC 1A01227, R. indicus, Roseovarius indicus Lai et al. 2011, Roseovarius sp. B108, strain 2PR52-14, strain B108
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