STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ORS3428_12170Anti-sigma factor. (224 aa)    
Predicted Functional Partners:
ORS3428_12165
RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.888
ORS3428_12175
Peptidase S8.
     
 0.820
ORS3428_17440
Two-component response regulator.
  
 
 0.553
ORS3428_00235
Uncharacterized protein; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.513
ORS3428_02045
RNA polymerase subunit sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.513
ORS3428_10295
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.513
ORS3428_14775
RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.513
ORS3428_25545
RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily.
   
 
 0.513
ORS3428_05135
RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.512
ORS3428_05530
RNA polymerase subunit sigma; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.512
Your Current Organism:
Mesorhizobium sp. ORS3428
NCBI taxonomy Id: 540997
Other names: M. sp. ORS 3428, Mesorhizobium sp. ORS 3428
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.