Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ORS3428_00020 | ORS3428_20275 | ORS3428_00020 | ORS3428_20275 | Potassium transporter. | NADH:flavin oxidoreductase. | 0.862 |
ORS3428_05035 | ORS3428_09345 | ORS3428_05035 | ORS3428_09345 | Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Glutamate synthase subunit alpha. | 0.867 |
ORS3428_05035 | ORS3428_20275 | ORS3428_05035 | ORS3428_20275 | Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | NADH:flavin oxidoreductase. | 0.953 |
ORS3428_05035 | gcvH | ORS3428_05035 | ORS3428_02960 | Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.921 |
ORS3428_05035 | gcvP | ORS3428_05035 | ORS3428_02955 | Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.867 |
ORS3428_05035 | prs | ORS3428_05035 | ORS3428_14095 | Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.995 |
ORS3428_07520 | ORS3428_19765 | ORS3428_07520 | ORS3428_19765 | Methyltransferase; Belongs to the trimethylamine methyltransferase family. | Methyltransferase; Belongs to the trimethylamine methyltransferase family. | 0.538 |
ORS3428_07520 | ORS3428_20275 | ORS3428_07520 | ORS3428_20275 | Methyltransferase; Belongs to the trimethylamine methyltransferase family. | NADH:flavin oxidoreductase. | 0.869 |
ORS3428_09345 | ORS3428_05035 | ORS3428_09345 | ORS3428_05035 | Glutamate synthase subunit alpha. | Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.867 |
ORS3428_09345 | ORS3428_20275 | ORS3428_09345 | ORS3428_20275 | Glutamate synthase subunit alpha. | NADH:flavin oxidoreductase. | 0.936 |
ORS3428_09345 | ORS3428_23785 | ORS3428_09345 | ORS3428_23785 | Glutamate synthase subunit alpha. | Uncharacterized protein. | 0.857 |
ORS3428_09345 | gcvH | ORS3428_09345 | ORS3428_02960 | Glutamate synthase subunit alpha. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.860 |
ORS3428_09345 | gcvP | ORS3428_09345 | ORS3428_02955 | Glutamate synthase subunit alpha. | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.935 |
ORS3428_09345 | prs | ORS3428_09345 | ORS3428_14095 | Glutamate synthase subunit alpha. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.564 |
ORS3428_19765 | ORS3428_07520 | ORS3428_19765 | ORS3428_07520 | Methyltransferase; Belongs to the trimethylamine methyltransferase family. | Methyltransferase; Belongs to the trimethylamine methyltransferase family. | 0.538 |
ORS3428_19765 | ORS3428_20275 | ORS3428_19765 | ORS3428_20275 | Methyltransferase; Belongs to the trimethylamine methyltransferase family. | NADH:flavin oxidoreductase. | 0.869 |
ORS3428_20245 | ORS3428_20275 | ORS3428_20245 | ORS3428_20275 | FAD-dependent oxidoreductase. | NADH:flavin oxidoreductase. | 0.871 |
ORS3428_20275 | ORS3428_00020 | ORS3428_20275 | ORS3428_00020 | NADH:flavin oxidoreductase. | Potassium transporter. | 0.862 |
ORS3428_20275 | ORS3428_05035 | ORS3428_20275 | ORS3428_05035 | NADH:flavin oxidoreductase. | Pyruvate dehydrogenase E1 component subunit beta; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.953 |
ORS3428_20275 | ORS3428_07520 | ORS3428_20275 | ORS3428_07520 | NADH:flavin oxidoreductase. | Methyltransferase; Belongs to the trimethylamine methyltransferase family. | 0.869 |
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