STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WBGene00274460Uncharacterized protein. (2388 aa)    
Predicted Functional Partners:
WBGene00275401
Protein kinase domain-containing protein.
    
 
 0.642
WBGene00118448
Anaphase-promoting complex subunit 3 protein.
   
  
 0.585
WBGene00114910
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.549
WBGene00106661
Unc-26.
    
 
 0.498
WBGene00102275
Lpd-3.
   
 
 0.482
WBGene00101309
Vps-39.
   
 
 0.480
WBGene00114611
NPA domain-containing protein.
      
 0.465
WBGene00118621
Npa-1.
      
 0.465
WBGene00276998
Wdfy-3.
   
 
 0.461
WBGene00116056
RING-type domain-containing protein.
   
 
 0.436
Your Current Organism:
Pristionchus pacificus
NCBI taxonomy Id: 54126
Other names: P. pacificus
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