STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WBGene00279067ADP ribosylation factor. (159 aa)    
Predicted Functional Partners:
WBGene00096783
Pleckstrin homology domain containing protein.
   
 
 0.946
WBGene00095779
Rabs-5.
    
 0.932
WBGene00106287
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.916
WBGene00112308
Vps-18.
   
 0.909
WBGene00205807
Rme-6.
    
 0.907
WBGene00278443
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
    
 0.904
WBGene00118758
Regulator of chromosome condensation repeat containing protein.
    
 0.896
WBGene00115057
Vps-33.1; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.893
WBGene00098519
Vps39_2 domain-containing protein.
    
 0.892
WBGene00106758
Vps-11.
    
 0.882
Your Current Organism:
Pristionchus pacificus
NCBI taxonomy Id: 54126
Other names: P. pacificus
Server load: medium (68%) [HD]