STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WBGene00281893Calpain_III domain-containing protein. (139 aa)    
Predicted Functional Partners:
WBGene00104581
HLH domain-containing protein.
   
 0.870
WBGene00099205
FERM domain containing protein.
    
 0.736
WBGene00097791
Ced-3; Belongs to the peptidase C14A family.
    
 0.722
WBGene00090391
Cdka-1.
   
 
 0.644
WBGene00275098
Uncharacterized protein.
    
 0.632
WBGene00280388
Uncharacterized protein.
    
 0.632
WBGene00109421
Ced-9.
    
 0.632
WBGene00118656
BH4_2 domain-containing protein.
    
 0.632
WBGene00104201
Hum-7; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
     
 0.614
WBGene00101260
Itsn-1.
     
 0.592
Your Current Organism:
Pristionchus pacificus
NCBI taxonomy Id: 54126
Other names: P. pacificus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.