STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WBGene00090073Ubc-12; Belongs to the ubiquitin-conjugating enzyme family. (180 aa)    
Predicted Functional Partners:
WBGene00099648
Rbx-1.
    
 0.986
WBGene00094785
Ula-1.
    
 0.985
WBGene00276051
Cullin domain-containing protein; Belongs to the cullin family.
    
 0.983
WBGene00089840
UBX domain-containing protein.
   
 
 0.974
WBGene00089905
RING-type domain-containing protein.
    
 0.951
WBGene00106945
Cul-3; Belongs to the cullin family.
    
 0.926
WBGene00091851
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
    
 0.923
WBGene00104491
Uba-5.
    
 0.912
WBGene00204309
Atg-7.
    
 0.903
WBGene00280970
Defective in cullin neddylation protein; Neddylation of cullins play an essential role in the regulation of SCF-type complexes activity.
    
 0.902
Your Current Organism:
Pristionchus pacificus
NCBI taxonomy Id: 54126
Other names: P. pacificus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.