STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WBGene00109520Uncharacterized protein. (481 aa)    
Predicted Functional Partners:
WBGene00089902
Ruvb-1.
    
 0.838
WBGene00092190
Xpb-1.
   
 0.831
WBGene00281105
Uncharacterized protein.
    
 0.823
WBGene00272158
Uncharacterized protein.
    
 0.801
WBGene00118153
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the tetraspanin (TM4SF) family.
    
 0.798
WBGene00098826
Peptidase.
   
 0.796
WBGene00278656
Uncharacterized protein.
    
 0.774
WBGene00101686
Xpd-1.
    
 0.762
WBGene00101613
Tlf-1.
   
 0.757
WBGene00107128
Cyh-1.
    
 0.748
Your Current Organism:
Pristionchus pacificus
NCBI taxonomy Id: 54126
Other names: P. pacificus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.