STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WBGene00116025Uncharacterized protein. (147 aa)    
Predicted Functional Partners:
WBGene00094140
Lin-42.
    
 0.757
WBGene00098701
Tag-151 protein.
    
 0.701
WBGene00115054
Kin-19; Belongs to the protein kinase superfamily.
    
 0.696
WBGene00114199
Rps-3; Belongs to the universal ribosomal protein uS3 family.
    
 0.690
WBGene00100767
Uncharacterized protein.
    
 0.680
WBGene00114688
Rbg-3.
    
 0.673
WBGene00089787
PAS domain-containing protein.
    
 0.670
WBGene00098832
Aha-1.
    
 0.670
WBGene00106788
Rps-2; Belongs to the universal ribosomal protein uS5 family.
    
 0.670
WBGene00108056
40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family.
    
  0.666
Your Current Organism:
Pristionchus pacificus
NCBI taxonomy Id: 54126
Other names: P. pacificus
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