Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CUX78918.1Hypothetical protein. (204 aa)    
Predicted Functional Partners:
CUX78919.1
tRNA (adenine57/58-N1)-methyltransferase.
       0.926
srp19
Signal recognition particle, subunit SRP19, putative; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds directly to 7S RNA and mediates binding of the 54 kDa subunit of the SRP.
       0.860
CUX78920.1
Methyltransferase MA1848.
       0.510
CUX78921.1
Putative periplasmic substrate-binding transport protein.
       0.510
CUX78922.1
Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1).
       0.500
CUX78923.1
Iron(III) dicitrate transport ATP-binding protein FecE (TC 3.A.1.14.1).
       0.500
Your Current Organism:
Thermococcus chitonophagus
NCBI taxonomy Id: 54262
Other names: DSM 10152, T. chitonophagus, strain GC74
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