TEA_007596 protein (Camellia sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TEA_007596

Uncharacterized protein. (690 aa)

Predicted Functional Partners:

TEA_023858

0.838

TEA_027711

0.836

TEA_003515

0.832

TEA_001822

0.831

TEA_007023

0.830

TEA_012434

0.827

TEA_023680

0.814

TEA_017012

0.785

TEA_006869

0.717

TEA_001045

0.717

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_001045	TEA_006869	A0A4V3WQS3	A0A4S4ELI7	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_001045	TEA_007596	A0A4V3WQS3	A0A4S4D5F2	Uncharacterized protein.	Uncharacterized protein.	0.717
TEA_001822	TEA_007596	A0A4S4EU50	A0A4S4D5F2	Uncharacterized protein.	Uncharacterized protein.	0.831
TEA_001822	TEA_012434	A0A4S4EU50	A0A4S4EPR2	Uncharacterized protein.	ANAPC5 domain-containing protein.	0.999
TEA_001822	TEA_017012	A0A4S4EU50	A0A4S4F5C3	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
TEA_001822	TEA_023680	A0A4S4EU50	A0A4V3WPS8	Uncharacterized protein.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.999
TEA_001822	TEA_027711	A0A4S4EU50	A0A4S4DPS5	Uncharacterized protein.	TPR_REGION domain-containing protein.	0.999
TEA_003515	TEA_007023	A0A4S4DT33	A0A4V3WK19	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_003515	TEA_007596	A0A4S4DT33	A0A4S4D5F2	Uncharacterized protein.	Uncharacterized protein.	0.832
TEA_003515	TEA_023858	A0A4S4DT33	A0A4S4DAN9	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_006869	TEA_001045	A0A4S4ELI7	A0A4V3WQS3	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_006869	TEA_007596	A0A4S4ELI7	A0A4S4D5F2	Uncharacterized protein.	Uncharacterized protein.	0.717
TEA_007023	TEA_003515	A0A4V3WK19	A0A4S4DT33	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_007023	TEA_007596	A0A4V3WK19	A0A4S4D5F2	Uncharacterized protein.	Uncharacterized protein.	0.830
TEA_007023	TEA_023858	A0A4V3WK19	A0A4S4DAN9	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_007596	TEA_001045	A0A4S4D5F2	A0A4V3WQS3	Uncharacterized protein.	Uncharacterized protein.	0.717
TEA_007596	TEA_001822	A0A4S4D5F2	A0A4S4EU50	Uncharacterized protein.	Uncharacterized protein.	0.831
TEA_007596	TEA_003515	A0A4S4D5F2	A0A4S4DT33	Uncharacterized protein.	Uncharacterized protein.	0.832
TEA_007596	TEA_006869	A0A4S4D5F2	A0A4S4ELI7	Uncharacterized protein.	Uncharacterized protein.	0.717
TEA_007596	TEA_007023	A0A4S4D5F2	A0A4V3WK19	Uncharacterized protein.	Uncharacterized protein.	0.830

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

24

average node degree:

4.36

avg. local clustering coefficient:

0.901

expected number of edges:

11

PPI enrichment p-value:

0.000451

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006289

Nucleotide-excision repair

3 of 5

2.28

1.79

0.00041

GO:0033554

Cellular response to stress

6 of 78

1.39

1.47

8.68e-05

GO:0006281

DNA repair

5 of 54

1.47

1.43

0.00026

GO:0009432

SOS response

3 of 15

1.8

1.22

0.0034

GO:0006308

DNA catabolic process

2 of 5

2.1

1.01

0.0128

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004536

Deoxyribonuclease activity

4 of 23

1.74

1.5

0.00063

GO:0008855

Exodeoxyribonuclease VII activity

2 of 2

2.5

1.16

0.0076

GO:0009381

Excinuclease ABC activity

2 of 3

2.33

1.11

0.0090

GO:0140097

Catalytic activity, acting on DNA

5 of 105

1.18

0.88

0.0039

GO:0140640

Catalytic activity, acting on a nucleic acid

6 of 242

0.9

0.63

0.0071

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009318

Exodeoxyribonuclease VII complex

2 of 2

2.5

1.32

0.0037

GO:0009380

Excinuclease repair complex

2 of 3

2.33

1.28

0.0041

GO:1902494

Catalytic complex

5 of 80

1.3

1.21

0.00043

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:617

DNA damage, and UvrD/REP helicase N-terminal domain

3 of 21

1.66

0.72

0.0372

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

tor03420

Nucleotide excision repair

3 of 9

2.03

1.66

0.00053

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:1990391

DNA repair complex

3 of 6

2.2

1.69

0.00058

GOCC:0009318

Exodeoxyribonuclease VII complex

2 of 2

2.5

1.14

0.0081

GOCC:0009380

Excinuclease repair complex

2 of 3

2.33

1.11

0.0090

GOCC:1902494

Catalytic complex

5 of 192

0.92

0.6

0.0141

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0234

DNA repair

5 of 29

1.74

2.22

6.15e-06

KW-0742

SOS response

3 of 10

1.98

1.67

0.00047

KW-0267

Excision nuclease

2 of 3

2.33

1.24

0.0049

KW-0228

DNA excision

2 of 3

2.33

1.24

0.0049

KW-0269

Exonuclease

2 of 15

1.63

0.74

0.0341

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF02151

UvrB/uvrC motif

2 of 2

2.5

0.84

0.0295

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00278

Helix-hairpin-helix DNA-binding motif class 1

2 of 8

1.9

0.7

0.0465

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (8%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About