STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TEA_027858Helicase ATP-binding domain-containing protein. (604 aa)    
Predicted Functional Partners:
TEA_013495
PRP8_domainIV domain-containing protein.
   
 0.988
TEA_025558
Uncharacterized protein.
   
 0.988
TEA_004421
Sm domain-containing protein.
   
 0.975
TEA_015618
Small nuclear ribonucleoprotein Sm D2.
   
 0.971
TEA_004734
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.969
TEA_024520
EFG_C domain-containing protein.
   
 0.964
TEA_005710
Tr-type G domain-containing protein.
   
 0.964
TEA_000271
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.953
TEA_019608
Uncharacterized protein.
   
 0.953
TEA_004067
Uncharacterized protein.
   
 0.953
Your Current Organism:
Camellia sinensis
NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis
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