TEA_012004 protein (Camellia sinensis) - STRING interaction network

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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second shell of interactors

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proteins of unknown 3D structure

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Gene Fusion

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Coexpression

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[Homology]

Score

TEA_012004

Uncharacterized protein. (178 aa)

Predicted Functional Partners:

TEA_021221

0.980

TEA_016855

0.947

TEA_004728

0.947

TEA_005711

0.904

TEA_024840

0.902

TEA_024679

0.899

TEA_000268

0.899

TEA_012600

0.899

TEA_014699

0.849

TEA_003290

0.847

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_000268	TEA_003290	A0A4S4EX88	A0A4S4D4A6	Rieske domain-containing protein.	Uncharacterized protein.	0.991
TEA_000268	TEA_004728	A0A4S4EX88	A0A4S4DMC9	Rieske domain-containing protein.	CYTB_NTER domain-containing protein.	0.995
TEA_000268	TEA_005711	A0A4S4EX88	A0A4S4DVF8	Rieske domain-containing protein.	Uncharacterized protein.	0.997
TEA_000268	TEA_012004	A0A4S4EX88	A0A4S4DV60	Rieske domain-containing protein.	Uncharacterized protein.	0.899
TEA_000268	TEA_014699	A0A4S4EX88	A0A4S4DW67	Rieske domain-containing protein.	Uncharacterized protein.	0.800
TEA_000268	TEA_016855	A0A4S4EX88	A0A4S4D0R8	Rieske domain-containing protein.	CYTB_NTER domain-containing protein.	0.995
TEA_000268	TEA_021221	A0A4S4EX88	A0A4S4EPB3	Rieske domain-containing protein.	Uncharacterized protein.	0.999
TEA_000268	TEA_024840	A0A4S4EX88	A0A4S4ECI2	Rieske domain-containing protein.	Uncharacterized protein.	0.726
TEA_003290	TEA_000268	A0A4S4D4A6	A0A4S4EX88	Uncharacterized protein.	Rieske domain-containing protein.	0.991
TEA_003290	TEA_004728	A0A4S4D4A6	A0A4S4DMC9	Uncharacterized protein.	CYTB_NTER domain-containing protein.	0.985
TEA_003290	TEA_005711	A0A4S4D4A6	A0A4S4DVF8	Uncharacterized protein.	Uncharacterized protein.	0.976
TEA_003290	TEA_012004	A0A4S4D4A6	A0A4S4DV60	Uncharacterized protein.	Uncharacterized protein.	0.847
TEA_003290	TEA_012600	A0A4S4D4A6	A0A4S4EZ37	Uncharacterized protein.	CytB6-F_Fe-S domain-containing protein.	0.988
TEA_003290	TEA_014699	A0A4S4D4A6	A0A4S4DW67	Uncharacterized protein.	Uncharacterized protein.	0.667
TEA_003290	TEA_016855	A0A4S4D4A6	A0A4S4D0R8	Uncharacterized protein.	CYTB_NTER domain-containing protein.	0.985
TEA_003290	TEA_021221	A0A4S4D4A6	A0A4S4EPB3	Uncharacterized protein.	Uncharacterized protein.	0.998
TEA_003290	TEA_024679	A0A4S4D4A6	A0A4S4ETV1	Uncharacterized protein.	Cytochrome b-c1 complex subunit Rieske, mitochondrial; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.991
TEA_003290	TEA_024840	A0A4S4D4A6	A0A4S4ECI2	Uncharacterized protein.	Uncharacterized protein.	0.695
TEA_004728	TEA_000268	A0A4S4DMC9	A0A4S4EX88	CYTB_NTER domain-containing protein.	Rieske domain-containing protein.	0.995
TEA_004728	TEA_003290	A0A4S4DMC9	A0A4S4D4A6	CYTB_NTER domain-containing protein.	Uncharacterized protein.	0.985

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Network Stats

number of nodes:

11

number of edges:

29

average node degree:

5.27

avg. local clustering coefficient:

0.706

expected number of edges:

15

PPI enrichment p-value:

0.000868

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006753

Nucleoside phosphate metabolic process

6 of 153

1.46

1.56

7.44e-05

GO:0009117

Nucleotide metabolic process

5 of 148

1.39

1.33

0.00031

GO:0019637

Organophosphate metabolic process

7 of 328

1.19

1.22

9.41e-05

GO:0009259

Ribonucleotide metabolic process

4 of 110

1.42

1.07

0.0031

GO:0000290

Deadenylation-dependent decapping of nuclear-transcribed mRNA

2 of 8

2.26

1.06

0.0106

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0052857

NADPHX epimerase activity

2 of 2

2.86

1.02

0.0146

GO:0052856

NADHX epimerase activity

2 of 2

2.86

1.02

0.0146

GO:0004551

Nucleotide diphosphatase activity

2 of 5

2.46

0.97

0.0170

GO:0047429

Nucleoside-triphosphate diphosphatase activity

2 of 6

2.39

0.96

0.0170

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:9541

Mixed, incl. AMP metabolic process, and GMP biosynthesis

3 of 16

2.14

1.71

0.00049

CL:5292

mRNA decay by 5 to 3 exoribonuclease, and U6 snRNP

3 of 17

2.11

1.7

0.00049

CL:9538

Metabolism of nucleotides, and Purine nucleoside metabolic process

4 of 45

1.81

1.65

0.00033

CL:9534

Mixed, incl. Metabolism of nucleotides, and Nicotinate and nicotinamide metabolism

5 of 111

1.52

1.44

0.00033

CL:5315

Stress granule assembly, and Deadenylation-independent decapping of nuclear-transcribed mRNA

2 of 5

2.46

1.28

0.0044

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00240

Pyrimidine metabolism

3 of 58

1.58

0.95

0.0099

map03018

RNA degradation

3 of 85

1.41

0.83

0.0148

map00230

Purine metabolism

3 of 88

1.4

0.82

0.0148

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0000932

P-body

3 of 17

2.11

1.41

0.0020

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0665

Pyrimidine biosynthesis

2 of 3

2.69

1.33

0.0038

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