TEA_017402 protein (Camellia sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TEA_017402

Uncharacterized protein. (564 aa)

Predicted Functional Partners:

TEA_005237

0.978

TEA_025366

0.976

TEA_025845

0.922

TEA_000936

0.921

TEA_003628

0.915

TEA_008991

0.901

TEA_005458

0.901

TEA_019812

0.900

TEA_017226

0.895

TEA_015806

0.895

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

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structured XML interaction data, according to the 'PSI-MI' data standard

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_000936	TEA_003628	A0A4V3WME8	A0A4S4E4M9	Uncharacterized protein.	Uncharacterized protein.	0.933
TEA_000936	TEA_005237	A0A4V3WME8	A0A4S4DUG1	Uncharacterized protein.	Uncharacterized protein.	0.916
TEA_000936	TEA_005458	A0A4V3WME8	A0A4S4E1X0	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.914
TEA_000936	TEA_008991	A0A4V3WME8	A0A4S4DHA7	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.914
TEA_000936	TEA_015806	A0A4V3WME8	A0A4S4EJF6	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.910
TEA_000936	TEA_017226	A0A4V3WME8	A0A4S4DNR9	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.910
TEA_000936	TEA_017402	A0A4V3WME8	A0A4S4E7J5	Uncharacterized protein.	Uncharacterized protein.	0.921
TEA_000936	TEA_019812	A0A4V3WME8	A0A4V3WLV5	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.914
TEA_000936	TEA_025366	A0A4V3WME8	A0A4V3WIR6	Uncharacterized protein.	Uncharacterized protein.	0.911
TEA_000936	TEA_025845	A0A4V3WME8	A0A4S4DVI4	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_003628	TEA_000936	A0A4S4E4M9	A0A4V3WME8	Uncharacterized protein.	Uncharacterized protein.	0.933
TEA_003628	TEA_005237	A0A4S4E4M9	A0A4S4DUG1	Uncharacterized protein.	Uncharacterized protein.	0.901
TEA_003628	TEA_005458	A0A4S4E4M9	A0A4S4E1X0	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.931
TEA_003628	TEA_008991	A0A4S4E4M9	A0A4S4DHA7	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.931
TEA_003628	TEA_015806	A0A4S4E4M9	A0A4S4EJF6	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.910
TEA_003628	TEA_017226	A0A4S4E4M9	A0A4S4DNR9	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.910
TEA_003628	TEA_017402	A0A4S4E4M9	A0A4S4E7J5	Uncharacterized protein.	Uncharacterized protein.	0.915
TEA_003628	TEA_019812	A0A4S4E4M9	A0A4V3WLV5	Uncharacterized protein.	Uncharacterized protein; Belongs to the FPP/GGPP synthase family.	0.931
TEA_003628	TEA_025366	A0A4S4E4M9	A0A4V3WIR6	Uncharacterized protein.	Uncharacterized protein.	0.896
TEA_003628	TEA_025845	A0A4S4E4M9	A0A4S4DVI4	Uncharacterized protein.	Uncharacterized protein.	0.925

page 1 of 6

Network Stats

number of nodes:

5

number of edges:

8

average node degree:

3.2

avg. local clustering coefficient:

0.867

expected number of edges:

4

PPI enrichment p-value:

0.0581

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006351

Transcription, DNA-templated

4 of 12

1.84

1.58

0.00052

GO:0034654

Nucleobase-containing compound biosynthetic process

5 of 121

0.93

0.5

0.0423

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003899

DNA-directed 5-3 RNA polymerase activity

4 of 6

2.14

2.25

3.45e-05

GO:0016779

Nucleotidyltransferase activity

5 of 69

1.17

0.99

0.0012

GO:0003677

DNA binding

7 of 182

0.9

0.75

0.00086

GO:0140640

Catalytic activity, acting on a nucleic acid

7 of 196

0.87

0.71

0.0011

GO:1901363

Heterocyclic compound binding

9 of 653

0.45

0.31

0.0306

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000428

DNA-directed RNA polymerase complex

4 of 7

2.07

2.42

1.14e-05

GO:0032991

Protein-containing complex

5 of 191

0.73

0.46

0.0229

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:289

RNA polymerase, and Nucleotide excision repair

6 of 7

2.25

4.17

2.06e-09

CL:97

Ribosome, and Protein export

8 of 105

1.2

1.48

1.07e-06

CL:618

Mixed, incl. WD40-repeat-containing domain superfamily, and ANK repeat

3 of 16

1.59

1.1

0.0044

CL:620

Mixed, incl. WD40-repeat-containing domain superfamily, and ANK repeat

2 of 7

1.77

0.77

0.0315

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03020

RNA polymerase

4 of 4

2.31

2.9

2.18e-06

map03420

Nucleotide excision repair

3 of 13

1.68

1.24

0.0024

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-9635486

Infection with Mycobacterium tuberculosis

4 of 44

1.27

1.06

0.0014

MAP-5663205

Infectious disease

4 of 47

1.24

1.04

0.0014

MAP-1643685

Disease

4 of 52

1.2

1.0

0.0014

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0031931

TORC1 complex

3 of 5

2.09

1.55

0.0010

GOCC:0000428

DNA-directed RNA polymerase complex

4 of 28

1.47

1.25

0.0010

GOCC:0032991

Protein-containing complex

8 of 367

0.65

0.51

0.0019

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0240

DNA-directed RNA polymerase

4 of 7

2.07

2.32

1.96e-05

KW-0548

Nucleotidyltransferase

5 of 36

1.46

1.58

6.43e-05

KW-0853

WD repeat

2 of 2

2.31

1.18

0.0064

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR036322

WD40-repeat-containing domain superfamily

3 of 4

2.19

1.35

0.0028

IPR015943

WD40/YVTN repeat-like-containing domain superfamily

3 of 4

2.19

1.35

0.0028

IPR001680

WD40 repeat

2 of 2

2.31

0.76

0.0412

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00320

WD40 repeats

2 of 2

2.31

1.08

0.0102

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