TEA_029890 protein (Camellia sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TEA_029890

PDCD2_C domain-containing protein. (419 aa)

Predicted Functional Partners:

TEA_021122

0.674

TEA_019881

0.674

TEA_004591

0.674

TEA_026893

0.674

TEA_026887

0.674

TEA_008658

0.674

TEA_002825

0.581

TEA_008787

0.504

TEA_010595

0.452

TEA_007044

0.450

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_002825	TEA_004591	A0A4V3WJ65	A0A4S4DJU3	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.911
TEA_002825	TEA_007044	A0A4V3WJ65	A0A4S4ESL4	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.948
TEA_002825	TEA_008658	A0A4V3WJ65	A0A4S4F4Z8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	S5 DRBM domain-containing protein.	0.842
TEA_002825	TEA_010595	A0A4V3WJ65	A0A4S4D6G2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.946
TEA_002825	TEA_019881	A0A4V3WJ65	A0A4S4DG04	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.842
TEA_002825	TEA_021122	A0A4V3WJ65	A0A4S4DBE3	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.842
TEA_002825	TEA_026887	A0A4V3WJ65	A0A4S4EXT0	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	0.842
TEA_002825	TEA_026893	A0A4V3WJ65	A0A4S4EX25	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	0.842
TEA_002825	TEA_029890	A0A4V3WJ65	A0A4S4EJK8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	PDCD2_C domain-containing protein.	0.581
TEA_004591	TEA_002825	A0A4S4DJU3	A0A4V3WJ65	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.911
TEA_004591	TEA_007044	A0A4S4DJU3	A0A4S4ESL4	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.965
TEA_004591	TEA_010595	A0A4S4DJU3	A0A4S4D6G2	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	Uncharacterized protein.	0.963
TEA_004591	TEA_029890	A0A4S4DJU3	A0A4S4EJK8	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	PDCD2_C domain-containing protein.	0.674
TEA_007044	TEA_002825	A0A4S4ESL4	A0A4V3WJ65	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.948
TEA_007044	TEA_004591	A0A4S4ESL4	A0A4S4DJU3	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.965
TEA_007044	TEA_008658	A0A4S4ESL4	A0A4S4F4Z8	Uncharacterized protein.	S5 DRBM domain-containing protein.	0.965
TEA_007044	TEA_010595	A0A4S4ESL4	A0A4S4D6G2	Uncharacterized protein.	Uncharacterized protein.	0.999
TEA_007044	TEA_019881	A0A4S4ESL4	A0A4S4DG04	Uncharacterized protein.	Uncharacterized protein.	0.965
TEA_007044	TEA_021122	A0A4S4ESL4	A0A4S4DBE3	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.966
TEA_007044	TEA_026887	A0A4S4ESL4	A0A4S4EXT0	Uncharacterized protein.	Uncharacterized protein; Belongs to the SecY/SEC61-alpha family.	0.965