TEA_006465 protein (Camellia sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TEA_006465

Uncharacterized protein. (320 aa)

Predicted Functional Partners:

TEA_018981

0.652

TEA_007486

0.649

TEA_016689

0.546

TEA_016801

0.515

TEA_006639

0.508

TEA_004734

0.506

TEA_028956

0.506

TEA_027945

0.505

TEA_029171

0.502

TEA_026821

0.501

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_004734	TEA_006465	A0A4S4DM61	A0A4S4F1P2	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Uncharacterized protein.	0.506
TEA_004734	TEA_007486	A0A4S4DM61	A0A4S4EV48	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	Nuclear cap-binding protein subunit 2.	0.999
TEA_004734	TEA_016689	A0A4S4DM61	A0A4S4DSW3	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	RNA_pol_L_2 domain-containing protein.	0.941
TEA_004734	TEA_018981	A0A4S4DM61	A0A4S4DPI2	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	RRM domain-containing protein.	0.506
TEA_004734	TEA_027945	A0A4S4DM61	A0A4S4DPJ2	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	RRM domain-containing protein.	0.932
TEA_004734	TEA_028956	A0A4S4DM61	A0A4S4E8H3	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	RRM domain-containing protein.	0.932
TEA_006465	TEA_004734	A0A4S4F1P2	A0A4S4DM61	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.506
TEA_006465	TEA_006639	A0A4S4F1P2	A0A4S4DQP4	Uncharacterized protein.	RRM domain-containing protein.	0.508
TEA_006465	TEA_007486	A0A4S4F1P2	A0A4S4EV48	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.649
TEA_006465	TEA_016689	A0A4S4F1P2	A0A4S4DSW3	Uncharacterized protein.	RNA_pol_L_2 domain-containing protein.	0.546
TEA_006465	TEA_016801	A0A4S4F1P2	A0A4S4DDF0	Uncharacterized protein.	RRM domain-containing protein.	0.515
TEA_006465	TEA_018981	A0A4S4F1P2	A0A4S4DPI2	Uncharacterized protein.	RRM domain-containing protein.	0.652
TEA_006465	TEA_026821	A0A4S4F1P2	A0A4S4EAG2	Uncharacterized protein.	RRM domain-containing protein.	0.501
TEA_006465	TEA_027945	A0A4S4F1P2	A0A4S4DPJ2	Uncharacterized protein.	RRM domain-containing protein.	0.505
TEA_006465	TEA_028956	A0A4S4F1P2	A0A4S4E8H3	Uncharacterized protein.	RRM domain-containing protein.	0.506
TEA_006465	TEA_029171	A0A4S4F1P2	A0A4S4D7W3	Uncharacterized protein.	RRM domain-containing protein.	0.502
TEA_006639	TEA_006465	A0A4S4DQP4	A0A4S4F1P2	RRM domain-containing protein.	Uncharacterized protein.	0.508
TEA_006639	TEA_007486	A0A4S4DQP4	A0A4S4EV48	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.789
TEA_006639	TEA_016801	A0A4S4DQP4	A0A4S4DDF0	RRM domain-containing protein.	RRM domain-containing protein.	0.607
TEA_006639	TEA_018981	A0A4S4DQP4	A0A4S4DPI2	RRM domain-containing protein.	RRM domain-containing protein.	0.461