TEA_017515 protein (Camellia sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

TEA_017515

Uncharacterized protein. (476 aa)

Predicted Functional Partners:

TEA_016689

0.651

TEA_028716

0.644

TEA_007486

0.595

TEA_022766

0.533

TEA_024008

0.533

TEA_024020

0.533

TEA_024743

0.533

TEA_006283

0.521

TEA_024069

0.517

TEA_004594

0.480

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_004594	TEA_017515	A0A4S4DHI8	A0A4S4F3A2	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	Uncharacterized protein.	0.480
TEA_006283	TEA_017515	A0A4V3WMU4	A0A4S4F3A2	Uncharacterized protein.	Uncharacterized protein.	0.521
TEA_007486	TEA_016689	A0A4S4EV48	A0A4S4DSW3	Nuclear cap-binding protein subunit 2.	RNA_pol_L_2 domain-containing protein.	0.969
TEA_007486	TEA_017515	A0A4S4EV48	A0A4S4F3A2	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.595
TEA_007486	TEA_022766	A0A4S4EV48	A0A4S4ECJ4	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.701
TEA_007486	TEA_024008	A0A4S4EV48	A0A4S4EDP5	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.701
TEA_007486	TEA_024020	A0A4S4EV48	A0A4S4EFB5	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.701
TEA_007486	TEA_024069	A0A4S4EV48	A0A4S4EBN6	Nuclear cap-binding protein subunit 2.	Uncharacterized protein.	0.647
TEA_007486	TEA_024743	A0A4S4EV48	A0A4S4EGH2	Nuclear cap-binding protein subunit 2.	CbamoylP_synth_lsu-like_ATP-bd domain-containing protein.	0.701
TEA_007486	TEA_028716	A0A4S4EV48	A0A4S4EC38	Nuclear cap-binding protein subunit 2.	Spt4 domain-containing protein.	0.987
TEA_016689	TEA_007486	A0A4S4DSW3	A0A4S4EV48	RNA_pol_L_2 domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.969
TEA_016689	TEA_017515	A0A4S4DSW3	A0A4S4F3A2	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.651
TEA_016689	TEA_022766	A0A4S4DSW3	A0A4S4ECJ4	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.876
TEA_016689	TEA_024008	A0A4S4DSW3	A0A4S4EDP5	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.876
TEA_016689	TEA_024020	A0A4S4DSW3	A0A4S4EFB5	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.876
TEA_016689	TEA_024069	A0A4S4DSW3	A0A4S4EBN6	RNA_pol_L_2 domain-containing protein.	Uncharacterized protein.	0.853
TEA_016689	TEA_024743	A0A4S4DSW3	A0A4S4EGH2	RNA_pol_L_2 domain-containing protein.	CbamoylP_synth_lsu-like_ATP-bd domain-containing protein.	0.876
TEA_016689	TEA_028716	A0A4S4DSW3	A0A4S4EC38	RNA_pol_L_2 domain-containing protein.	Spt4 domain-containing protein.	0.999
TEA_017515	TEA_004594	A0A4S4F3A2	A0A4S4DHI8	Uncharacterized protein.	Uncharacterized protein; Belongs to the glycosyltransferase 29 family.	0.480
TEA_017515	TEA_006283	A0A4S4F3A2	A0A4V3WMU4	Uncharacterized protein.	Uncharacterized protein.	0.521

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Network Stats

number of nodes:

11

number of edges:

48

average node degree:

8.73

avg. local clustering coefficient:

0.882

expected number of edges:

14

PPI enrichment p-value:

2.36e-12

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 105

1.18

1.73

1.89e-10

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

10 of 54

1.42

2.55

2.74e-11

GO:0019843

rRNA binding

8 of 40

1.46

2.33

9.08e-09

GO:0003723

RNA binding

9 of 99

1.11

1.4

1.28e-07

GO:0003676

Nucleic acid binding

10 of 282

0.7

0.64

3.33e-05

GO:0000049

tRNA binding

3 of 24

1.25

0.63

0.0375

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

10 of 57

1.4

2.52

8.87e-12

GO:0015935

Small ribosomal subunit

3 of 7

1.79

1.59

0.00043

GO:0005622

Intracellular anatomical structure

11 of 739

0.33

0.29

0.0029

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:71

Structural constituent of ribosome

7 of 22

1.66

2.97

2.37e-09

CL:67

Ribosomal protein

10 of 49

1.46

2.82

2.24e-12

CL:69

Structural constituent of ribosome

9 of 41

1.5

2.79

3.45e-11

CL:65

Ribosomal protein

11 of 63

1.4

2.63

3.90e-13

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03010

Ribosome

10 of 57

1.4

2.52

9.87e-12

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 45

1.35

1.75

1.41e-06

GOCC:0022626

Cytosolic ribosome

3 of 17

1.4

0.95

0.0066

GOCC:0043229

Intracellular organelle

9 of 181

0.85

0.83

1.66e-05

GOCC:0044391

Ribosomal subunit

3 of 23

1.27

0.79

0.0128

GOCC:0005622

Intracellular

11 of 670

0.37

0.31

0.0026

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

10 of 55

1.41

2.56

1.16e-11

KW-0699

rRNA-binding

8 of 39

1.47

2.44

2.71e-09

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