TEA_003046 protein (Camellia sinensis) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Score

TEA_003046

DNL-type domain-containing protein. (344 aa)

Predicted Functional Partners:

TEA_012218

0.983

TEA_003018

0.923

TEA_023187

0.923

TEA_014378

0.906

TEA_008759

0.906

TEA_029075

0.828

TEA_003952

0.807

TEA_023166

0.807

TEA_015055

0.585

TEA_021096

0.552

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_003018	TEA_003046	A0A4S4DQN8	A0A4V3WKY6	TPR_REGION domain-containing protein.	DNL-type domain-containing protein.	0.923
TEA_003018	TEA_003952	A0A4S4DQN8	A0A4S4DRQ9	TPR_REGION domain-containing protein.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.794
TEA_003018	TEA_008759	A0A4S4DQN8	A0A4S4EQH7	TPR_REGION domain-containing protein.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.927
TEA_003018	TEA_012218	A0A4S4DQN8	A0A4S4E362	TPR_REGION domain-containing protein.	Uncharacterized protein; Belongs to the precorrin methyltransferase family.	0.939
TEA_003018	TEA_014378	A0A4S4DQN8	A0A4S4DXU2	TPR_REGION domain-containing protein.	Uroporphyrinogen_deCOase domain-containing protein.	0.927
TEA_003018	TEA_015055	A0A4S4DQN8	A0A4S4ED97	TPR_REGION domain-containing protein.	Rieske domain-containing protein.	0.517
TEA_003018	TEA_021096	A0A4S4DQN8	A0A4V3WK84	TPR_REGION domain-containing protein.	Uncharacterized protein.	0.762
TEA_003018	TEA_023166	A0A4S4DQN8	A0A4S4F0B5	TPR_REGION domain-containing protein.	Amino_oxidase domain-containing protein.	0.794
TEA_003018	TEA_029075	A0A4S4DQN8	A0A4S4DWI0	TPR_REGION domain-containing protein.	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.	0.884
TEA_003046	TEA_003018	A0A4V3WKY6	A0A4S4DQN8	DNL-type domain-containing protein.	TPR_REGION domain-containing protein.	0.923
TEA_003046	TEA_003952	A0A4V3WKY6	A0A4S4DRQ9	DNL-type domain-containing protein.	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	0.807
TEA_003046	TEA_008759	A0A4V3WKY6	A0A4S4EQH7	DNL-type domain-containing protein.	Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.	0.906
TEA_003046	TEA_012218	A0A4V3WKY6	A0A4S4E362	DNL-type domain-containing protein.	Uncharacterized protein; Belongs to the precorrin methyltransferase family.	0.983
TEA_003046	TEA_014378	A0A4V3WKY6	A0A4S4DXU2	DNL-type domain-containing protein.	Uroporphyrinogen_deCOase domain-containing protein.	0.906
TEA_003046	TEA_015055	A0A4V3WKY6	A0A4S4ED97	DNL-type domain-containing protein.	Rieske domain-containing protein.	0.585
TEA_003046	TEA_021096	A0A4V3WKY6	A0A4V3WK84	DNL-type domain-containing protein.	Uncharacterized protein.	0.552
TEA_003046	TEA_023166	A0A4V3WKY6	A0A4S4F0B5	DNL-type domain-containing protein.	Amino_oxidase domain-containing protein.	0.807
TEA_003046	TEA_023187	A0A4V3WKY6	A0A4S4EXK9	DNL-type domain-containing protein.	TPR_REGION domain-containing protein.	0.923
TEA_003046	TEA_029075	A0A4V3WKY6	A0A4S4DWI0	DNL-type domain-containing protein.	Glutamyl-tRNA reductase; Belongs to the glutamyl-tRNA reductase family.	0.828
TEA_003952	TEA_003018	A0A4S4DRQ9	A0A4S4DQN8	Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.	TPR_REGION domain-containing protein.	0.794

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Network Stats

number of nodes:

6

number of edges:

11

average node degree:

3.67

avg. local clustering coefficient:

0.822

expected number of edges:

5

PPI enrichment p-value:

0.0149

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0000724

Double-strand break repair via homologous recombination

4 of 4

2.79

4.4

1.72e-07

GO:0006310

DNA recombination

5 of 158

1.29

1.4

0.00013

GO:0016043

Cellular component organization

5 of 184

1.22

1.26

0.00022

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008854

Exodeoxyribonuclease V activity

4 of 4

2.79

4.53

1.04e-07

GO:0003678

DNA helicase activity

4 of 13

2.28

3.61

8.94e-07

GO:0004386

Helicase activity

5 of 31

2.0

3.56

1.50e-07

GO:0005524

ATP binding

5 of 361

0.93

0.74

0.0029

GO:0016787

Hydrolase activity

5 of 524

0.77

0.54

0.0104

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0009338

Exodeoxyribonuclease V complex

4 of 4

2.79

4.98

1.96e-08

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:689

DNA repair, and DNA repair complex

5 of 38

1.91

3.1

8.09e-07

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map03440

Homologous recombination

4 of 45

1.74

2.17

4.87e-05

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009338

Exodeoxyribonuclease V complex

4 of 4

2.79

4.78

4.23e-08

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0269

Exonuclease

3 of 15

2.09

2.04

0.00044

KW-0347

Helicase

3 of 24

1.89

1.79

0.00078

KW-0234

DNA repair

3 of 30

1.79

1.69

0.00096

KW-0238

DNA-binding

3 of 130

1.15

0.69

0.0318

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF13538

UvrD-like helicase C-terminal domain

2 of 4

2.49

1.13

0.0201

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR027785

UvrD-like helicase C-terminal domain

3 of 3

2.79

2.73

7.47e-05

IPR014016

UvrD-like helicase, ATP-binding domain

2 of 4

2.49

1.17

0.0173

IPR011335

Restriction endonuclease type II-like

2 of 8

2.19

0.93

0.0388

IPR027417

P-loop containing nucleoside triphosphate hydrolase

5 of 230

1.13

0.9

0.0044

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