TEA_009753 protein (Camellia sinensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TEA_009753

Sod_Cu domain-containing protein. (166 aa)

Predicted Functional Partners:

TEA_001398

0.982

TEA_007501

0.977

TEA_002748

0.971

TEA_004243

0.971

TEA_010770

0.886

TEA_011000

0.867

TEA_020912

0.867

TEA_007150

0.866

TEA_011598

0.866

TEA_003822

0.866

Your Current Organism:

Camellia sinensis

NCBI taxonomy Id: 542762
Other names: C. sinensis var. sinensis, Camellia sinensis var. sinensis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TEA_001398	TEA_002748	A0A4S4EMW1	A0A4S4EGS3	HMA domain-containing protein.	Uncharacterized protein.	0.919
TEA_001398	TEA_004243	A0A4S4EMW1	A0A4V3WMM0	HMA domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.919
TEA_001398	TEA_007501	A0A4S4EMW1	A0A4S4EDG7	HMA domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.919
TEA_001398	TEA_009753	A0A4S4EMW1	A0A4V3WL63	HMA domain-containing protein.	Sod_Cu domain-containing protein.	0.982
TEA_001398	TEA_010770	A0A4S4EMW1	A0A4S4CYX9	HMA domain-containing protein.	Sod_Cu domain-containing protein.	0.986
TEA_001398	TEA_011000	A0A4S4EMW1	A0A4S4DXV8	HMA domain-containing protein.	Sod_Cu domain-containing protein.	0.981
TEA_001398	TEA_011598	A0A4S4EMW1	A0A4S4ENR3	HMA domain-containing protein.	Sod_Cu domain-containing protein.	0.981
TEA_001398	TEA_020912	A0A4S4EMW1	A0A4S4EG75	HMA domain-containing protein.	Sod_Cu domain-containing protein.	0.981
TEA_002748	TEA_001398	A0A4S4EGS3	A0A4S4EMW1	Uncharacterized protein.	HMA domain-containing protein.	0.919
TEA_002748	TEA_003822	A0A4S4EGS3	A0A4S4EUY0	Uncharacterized protein.	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.807
TEA_002748	TEA_007150	A0A4S4EGS3	A0A4S4D5Y6	Uncharacterized protein.	Uncharacterized protein.	0.807
TEA_002748	TEA_007501	A0A4S4EGS3	A0A4S4EDG7	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.912
TEA_002748	TEA_009753	A0A4S4EGS3	A0A4V3WL63	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.971
TEA_002748	TEA_010770	A0A4S4EGS3	A0A4S4CYX9	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.972
TEA_002748	TEA_011000	A0A4S4EGS3	A0A4S4DXV8	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.957
TEA_002748	TEA_011598	A0A4S4EGS3	A0A4S4ENR3	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.935
TEA_002748	TEA_020912	A0A4S4EGS3	A0A4S4EG75	Uncharacterized protein.	Sod_Cu domain-containing protein.	0.957
TEA_003822	TEA_002748	A0A4S4EUY0	A0A4S4EGS3	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Uncharacterized protein.	0.807
TEA_003822	TEA_004243	A0A4S4EUY0	A0A4V3WMM0	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.807
TEA_003822	TEA_007501	A0A4S4EUY0	A0A4S4EDG7	Myosin motor domain-containing protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.807

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

41

average node degree:

7.45

avg. local clustering coefficient:

0.924

expected number of edges:

11

PPI enrichment p-value:

1.11e-12

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042819

Vitamin B6 biosynthetic process

6 of 10

2.44

4.82

2.42e-10

GO:0042823

Pyridoxal phosphate biosynthetic process

5 of 6

2.59

4.39

3.76e-09

GO:0008615

Pyridoxine biosynthetic process

5 of 9

2.41

4.14

6.41e-09

GO:1901617

Organic hydroxy compound biosynthetic process

6 of 30

1.97

3.54

6.41e-09

GO:0019438

Aromatic compound biosynthetic process

7 of 258

1.1

1.17

2.47e-05

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0050570

4-hydroxythreonine-4-phosphate dehydrogenase activity

3 of 3

2.66

2.09

0.00014

GO:0050897

Cobalt ion binding

3 of 6

2.36

1.87

0.00030

GO:0000287

Magnesium ion binding

5 of 105

1.34

1.22

0.00056

GO:0051287

NAD binding

3 of 49

1.45

0.78

0.0211

GO:0046872

Metal ion binding

7 of 610

0.72

0.47

0.0174

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005622

Intracellular anatomical structure

11 of 1859

0.44

0.35

0.0027

GO:0005737

Cytoplasm

10 of 1759

0.42

0.31

0.0159

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:575

Mixed, incl. mRNA processing, and K Homology domain, type 2

5 of 5

2.66

4.4

4.56e-09

CL:7368

Pyridoxal phosphate biosynthetic process, and Glycine zipper 2TM domain

2 of 5

2.27

0.8

0.0332

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map00750

Vitamin B6 metabolism

6 of 17

2.21

4.5

2.45e-10

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0664

Pyridoxine biosynthesis

3 of 6

2.36

2.01

0.00016

KW-0460

Magnesium

4 of 151

1.09

0.66

0.0192

KW-0520

NAD

3 of 74

1.27

0.66

0.0315

KW-0963

Cytoplasm

6 of 393

0.85

0.58

0.0092

KW-0560

Oxidoreductase

4 of 222

0.92

0.5

0.0406

(more ...)

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04166

Pyridoxal phosphate biosynthetic protein PdxA

3 of 3

2.66

2.13

0.00012

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR005255

PdxA family

3 of 3

2.66

1.91

0.00031

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (8%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About