STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DD238_002519Protein CLP1 homolog; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation; Belongs to the Clp1 family. Clp1 subfamily. (438 aa)    
Predicted Functional Partners:
DD237_008014
CID domain-containing protein.
    
 0.999
DD237_002279
Uncharacterized protein.
    
 0.996
DD237_002709
Uncharacterized protein.
    
 
 0.952
DD238_002021
RRM domain-containing protein.
   
 0.941
DD238_004292
Fip1 domain-containing protein.
    
 0.938
DD238_006964
TPR_REGION domain-containing protein.
    
 0.937
DD238_005177
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.909
DD238_007032
CPSF_A domain-containing protein.
   
 0.897
DD238_002824
Uncharacterized protein.
   
  0.866
DD237_002013
tRNA_int_endo domain-containing protein.
    
 0.862
Your Current Organism:
Peronospora effusa
NCBI taxonomy Id: 542832
Other names: P. effusa
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.