STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DD238_003980Uncharacterized protein. (630 aa)    
Predicted Functional Partners:
DD238_006781
Uncharacterized protein.
    
 0.814
DD237_007112
SMN domain-containing protein.
    
 0.805
DD237_007873
Small nuclear ribonucleoprotein Sm D2.
    
 0.802
DD237_003315
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.785
DD238_006611
DNA polymerase.
   
 0.785
DD238_005797
Sm domain-containing protein.
    
  0.779
DD237_001400
Small nuclear ribonucleoprotein G.
    
  0.770
DD238_002342
Uncharacterized protein.
    
 0.768
DD237_005397
Sm domain-containing protein.
    
 0.752
DD237_005252
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
    
 0.752
Your Current Organism:
Peronospora effusa
NCBI taxonomy Id: 542832
Other names: P. effusa
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