STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJF74798.1MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)    
Predicted Functional Partners:
AJF74799.1
Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.871
AJF74797.1
MFS transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.778
ygcS_1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.686
ygcS_2
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.650
proP_2
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.558
proP_1
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.527
kgtP
Alpha-ketoglutarate transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.469
AJF71434.1
IolT; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.428
AJF73527.1
Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.412
Your Current Organism:
Raoultella ornithinolytica
NCBI taxonomy Id: 54291
Other names: ATCC 31898, CCUG 26769, CIP 103364, CIP 103576, DSM 7464, JCM 6096, Klebsiella ornithinolytica, Klebsiella sp. Yangling I2, NBRC 105727, NIH 90-72, R. ornithinolytica
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