STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
scpBSegregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (187 aa)    
Predicted Functional Partners:
scpA
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.999
smc
Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 0.864
EED07426.1
PFAM: peptidase M50; KEGG: hmo:HM1_1882 peptidase M50.
       0.780
EED07419.1
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: sth:STH1783 ribosomal large subunit pseudouridine synthase B; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.759
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
  
    0.697
EED07283.1
TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: gtn:GTNG_1404 putative GTPases (dynamin-related).
  
  
 0.639
EED07427.1
KEGG: mxa:MXAN_6241 hypothetical protein.
  
    0.631
EED07422.1
TIGRFAM: sporulation protein YtfJ; PFAM: Sporulation protein YtfJ; KEGG: bpu:BPUM_2582 sporulation protein YtfJ.
       0.626
EED07423.1
KEGG: gka:GK2789 hypothetical protein.
       0.626
EED07351.1
Pseudouridine synthase; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; KEGG: gtn:GTNG_2737 ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family.
 
  
 0.610
Your Current Organism:
Alicyclobacillus acidocaldarius LAA1
NCBI taxonomy Id: 543302
Other names: A. acidocaldarius LAA1, Alicyclobacillus acidocaldarius str. LAA1, Alicyclobacillus acidocaldarius strain LAA1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.