STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP88068.1Hypothetical protein. (205 aa)    
Predicted Functional Partners:
SEP88096.1
Transferase 2, rSAM/selenodomain-associated.
   
 0.995
SER37000.1
Radical SAM/Cys-rich domain-containing protein.
 
     0.800
SEP88128.1
Predicted arabinose efflux permease, MFS family.
       0.792
SER37098.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
 
   
 0.707
SER37027.1
Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.667
SEQ19327.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
   
   0.663
SER37145.1
NADH dehydrogenase, FAD-containing subunit.
 
    0.586
SEQ39127.1
Protein of unknown function.
 
     0.556
SER37124.1
Protein of unknown function.
 
    0.495
Your Current Organism:
Pseudomonas cuatrocienegasensis
NCBI taxonomy Id: 543360
Other names: CIP 109853, LMG 24676, LMG:24676, P. cuatrocienegasensis, Pseudomonas cuatrocienegasensis Escalante et al. 2009, Pseudomonas sp. 1N, Pseudomonas sp. 3N, strain 1N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.