STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ06892.1Ribosome modulation factor. (68 aa)    
Predicted Functional Partners:
SEP93184.1
Sigma 54 modulation protein / S30EA ribosomal protein.
   
 
 0.807
SEQ06327.1
Ribosomal subunit interface protein.
   
 
 0.807
SEQ48581.1
Sigma 54 modulation protein /SSU ribosomal protein S30P.
   
 
 0.807
rpsR
SSU ribosomal protein S18P; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.
    
 
 0.696
rpsU
SSU ribosomal protein S21P; Belongs to the bacterial ribosomal protein bS21 family.
    
 
 0.695
rpsE
SSU ribosomal protein S5P; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.
    
 
 0.687
rpmC
LSU ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
    
 
 0.686
rpsD
SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
 
 0.684
rpmG
LSU ribosomal protein L33P; Belongs to the bacterial ribosomal protein bL33 family.
    
 
 0.679
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
    
 
 0.679
Your Current Organism:
Pseudomonas cuatrocienegasensis
NCBI taxonomy Id: 543360
Other names: CIP 109853, LMG 24676, LMG:24676, P. cuatrocienegasensis, Pseudomonas cuatrocienegasensis Escalante et al. 2009, Pseudomonas sp. 1N, Pseudomonas sp. 3N, strain 1N
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.